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1

A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling

Blagoev, Blagoy, Kratchmarova, Irina, Ong, Shao-En, Nielsen, Mogens, Foster, Leonard J., Mann, Matthias

Journal:

Nature Biotechnology

Year:

2003

Language:

english

File:

PDF, 1.03 MB

english, 2003

2

Phosphoproteomic profiling reveals a defined genetic program for osteoblastic lineage commitment of human bone marrow–derived stromal stem cells

Barrio-Hernandez, Inigo, Jafari, Abbas, Rigbolt, Kristoffer T.G., Hallenborg, Philip, Sanchez-Quiles, Virginia, Skovrind, Ida, Akimov, Vyacheslav, Kratchmarova, Irina, Dengjel, Joern, Kassem, Moustaph

Journal:

Genome Research

Year:

2019

File:

PDF, 7.48 MB

2019

3

StUbEx: Stable Tagged Ubiquitin Exchange System for the Global Investigation of Cellular Ubiquitination

Akimov, Vyacheslav, Henningsen, Jeanette, Hallenborg, Philip, Rigbolt, Kristoffer T. G., Jensen, Søren Skov, Nielsen, Mogens M., Kratchmarova, Irina, Blagoev, Blagoy

Journal:

Journal of Proteome Research

Year:

2014

Language:

english

File:

PDF, 6.19 MB

english, 2014

4

Nuclear Phosphoproteomic Screen Uncovers ACLY as Mediator of IL-2-induced Proliferation of CD4 + T lymphocytes

Osinalde, Nerea, Mitxelena, Jone, Sánchez-Quiles, Virginia, Akimov, Vyacheslav, Aloria, Kerman, Arizmendi, Jesus M., Zubiaga, Ana M., Blagoev, Blagoy, Kratchmarova, Irina

Journal:

Molecular & Cellular Proteomics

Year:

2016

Language:

english

File:

PDF, 3.10 MB

english, 2016

5

NADH dehydrogenase complex�I is overexpressed in incipient metastatic murine colon cancer cells

Marquez, Joana, Kratchmarova, Irina, Akimov, Vyacheslav, Unda, Fernando, Ibarretxe, Gaskon, Clerigu�, Ariane, Osinalde, Nerea, Badiola, Iker

Journal:

Oncology Reports

Year:

2018

Language:

english

File:

PDF, 1.13 MB

english, 2018

6

CYLD deubiquitinase is necessary for proper ubiquitination and degradation of the epidermal growth factor receptor

Sanchez-Quiles, Virginia, Akimov, Vyacheslav, Osinalde, Nerea, Francavilla, Chiara, Puglia, Michele, Barrio-Hernandez, Inigo, Kratchmarova, Irina, Olsen, Jesper V, Blagoev, Blagoy

Journal:

Molecular & Cellular Proteomics

Year:

2017

Language:

english

File:

PDF, 3.95 MB

english, 2017

7

Kappa- opioid receptor regulates human sperm functions via SPANX-A/D protein family

Urizar-Arenaza, Itziar, Osinalde, Nerea, Akimov, Vyacheslav, Puglia, Michele, MuÃ±oa-Hoyos, Iraia, GÃ³mez-GimÃ©nez, BelÃ©n, Gianzo, Marta, Ganzabal, Teresa, Blagoev, Blagoy, Kratchmarova, Irina, Subir

Journal:

Reproductive Biology

Year:

2020

File:

PDF, 657 KB

2020

8

StUbEx PLUS—A Modified Stable Tagged Ubiquitin Exchange System for Peptide Level Purification and In-Depth Mapping of Ubiquitination Sites

Akimov, Vyacheslav, Olsen, Louise C. B., Hansen, Sten V. F., Barrio-Hernandez, Inigo, Puglia, Michele, Jensen, Søren S., Solov’yov, Ilia A., Kratchmarova, Irina, Blagoev, Blagoy

Journal:

Journal of Proteome Research

Year:

2017

Language:

english

File:

PDF, 1.49 MB

english, 2017

9

Development of novel monoclonal antibodies that define differentiation stages of human stromal (mesenchymal) stem cells

Ditte C. Andersen, Angela Kortesidis, Andrew C. W. Zannettino, Irina Kratchmarova, Li Chen, Ole N. Jensen, Børge Teisner, Stan Gronthos, Charlotte H. Jensen, Moustapha Kassem

Journal:

Molecules and Cells

Year:

2011

Language:

english

File:

PDF, 2.94 MB

english, 2011

10

Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics

Blagoev, Blagoy, Ong, Shao-En, Kratchmarova, Irina, Mann, Matthias

Journal:

Nature Biotechnology

Year:

2004

Language:

english

File:

PDF, 329 KB

english, 2004

11

Peroxisome Proliferator-Activated Receptor γ Recruits the Positive Transcription Elongation Factor b Complex to Activate Transcription and Promote Adipogenesis

Iankova, Irena, Petersen, Rasmus K., Annicotte, Jean-Sébastien, Chavey, Carine, Hansen, Jacob B., Kratchmarova, Irina, Sarruf, David, Benkirane, Monsef, Kristiansen, Karsten, Fajas, Lluis

Journal:

Molecular Endocrinology

Year:

2006

Language:

english

File:

PDF, 676 KB

english, 2006

12

Properties of 13 C-Substituted Arginine in Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC)

Ong, Shao-En, Kratchmarova, Irina, Mann, Matthias

Journal:

Journal of Proteome Research

Year:

2003

Language:

english

File:

PDF, 206 KB

english, 2003

13

Data on mass spectrometry-based proteomics for studying the involvement of CYLD in the ubiquitination events downstream of EGFR activation

Sanchez-Quiles, Virginia, Osinalde, Nerea, Akimov, Vyacheslav, Kratchmarova, Irina, Blagoev, Blagoy

Journal:

Year:

2018

Language:

english

File:

PDF, 853 KB

english, 2018

14

Automatic inducer addition and harvesting of recombinant Escherichia coli cultures based on indirect on-line estimation of biomass concentration and specific growth rate

Niels Thomas Eriksen, Irina Kratchmarova, Søren Neve, Karsten Kristiansen, Jens Jørgen Lønsmann Iversen

Journal:

Biotechnology and Bioengineering

Year:

2001

Language:

english

File:

PDF, 176 KB

english, 2001

15

SPANX-A/D protein subfamily plays a key role in nuclear organisation, metabolism and flagellar motility of human spermatozoa

Urizar-Arenaza, Itziar, Osinalde, Nerea, Akimov, Vyacheslav, Puglia, Michele, MuÃ±oa-Hoyos, Iraia, Gianzo, Marta, Rodriguez, Jose Antonio, Ganzabal, Teresa, Blagoev, Blagoy, Kratchmarova, Irina, Subir

Journal:

Scientific Reports

Year:

2020

File:

PDF, 4.01 MB

2020

16

Receptor tyrosine kinase signaling: a view from quantitative proteomics

Dengjel, Joern, Kratchmarova, Irina, Blagoev, Blagoy

Journal:

Molecular BioSystems

Year:

2009

Language:

english

File:

PDF, 1.57 MB

english, 2009

17

Cellular Proteome Dynamics during Differentiation of Human Primary Myoblasts

Le Bihan, Marie-Catherine, Barrio-Hernandez, Inigo, Mortensen, Tenna Pavia, Henningsen, Jeanette, Jensen, Søren Skov, Bigot, Anne, Blagoev, Blagoy, Butler-Browne, Gillian, Kratchmarova, Irina

Journal:

Journal of Proteome Research

Year:

2015

Language:

english

File:

PDF, 5.61 MB

english, 2015

18

Data on interleukin (IL)-2- and IL-15-dependent changes in IL-2R β and IL-2Rγ complexes

Osinalde, Nerea, Sánchez-Quiles, Virginia, Blagoev, Blagoy, Kratchmarova, Irina

Journal:

Year:

2017

Language:

english

File:

PDF, 821 KB

english, 2017

19

Opposing Effects of Fatty Acids and Acyl-CoA Esters on Conformation and Cofactor Recruitment of Peroxisome Proliferator-Activated Receptors

CLAUS JØRGENSEN, ANNE-M. KROGSDAM, IRINA KRATCHMAROVA, TIMOTHY M. WILLSON, JENS KNUDSEN, SUSANNE MANDRUP, KARSTEN KRISTIANSEN

Journal:

Annals of the New York Academy of Sciences

Year:

2002

Language:

english

File:

PDF, 3.49 MB

english, 2002

20

Simultaneous dissection and comparison of IL-2 and IL-15 signaling pathways by global quantitative phosphoproteomics

Osinalde, Nerea, Sanchez-Quiles, Virginia, Akimov, Vyacheslav, Guerra, Barbara, Blagoev, Blagoy, Kratchmarova, Irina

Journal:

Year:

2015

Language:

english

File:

PDF, 930 KB

english, 2015

21

Interleukin-2 signaling pathway analysis by quantitative phosphoproteomics

Nerea Osinalde, Helle Moss, Onetsine Arrizabalaga, Miren J. Omaetxebarria, Blagoy Blagoev, Ana M. Zubiaga, Asier Fullaondo, Jesus M. Arizmendi, Irina Kratchmarova

Journal:

Journal of Proteomics

Year:

2011

Language:

english

File:

PDF, 1.37 MB

english, 2011

22

Changes in Gab2 phosphorylation and interaction partners in response to interleukin (IL)-2 stimulation in T-lymphocytes

Osinalde, Nerea, Sánchez-Quiles, Virginia, Blagoev, Blagoy, Kratchmarova, Irina

Journal:

Scientific Reports

Year:

2016

Language:

english

File:

PDF, 1.34 MB

english, 2016

23

Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases

Pandey, Akhilesh, Blagoev, Blagoy, Kratchmarova, Irina, Fernandez, Minerva, Nielsen, Mogens, Kristiansen, Troels Zakarias, Ohara, Osamu, Podtelejnikov, Alexandre V, Roche, Serge, Lodish, Harvey F

Journal:

Year:

2002

Language:

english

File:

PDF, 397 KB

english, 2002

24

SILAC-based quantification of changes in protein tyrosine phosphorylation induced by Interleukin-2 (IL-2) and IL-15 in T-lymphocytes

Osinalde, Nerea, Sánchez-Quiles, Virginia, Akimov, Vyacheslav, Blagoev, Blagoy, Kratchmarova, Irina

Journal:

Year:

2015

Language:

english

File:

PDF, 711 KB

english, 2015

25

Characterization of receptor-associated protein complex assembly in Interleukin (IL)-2- and IL-15-activated T-cell lines

Osinalde, Nerea, Sanchez-Quiles, Virginia, Akimov, Vyacheslav, Aloria, Kerman, Arizmendi, Jesus M, Blagoev, Blagoy, Kratchmarova, Irina

Journal:

Journal of Proteome Research

Year:

2016

Language:

english

File:

PDF, 1.64 MB

english, 2016

26

Cloning of a novel signaling molecule, AMSH-2, that potentiates transforming growth factor β signaling

Nieves Ibarrola, Irina Kratchmarova, Daisuke Nakajima, William P Schiemann, Aristidis Moustakas, Akhilesh Pandey, Matthias Mann

Journal:

BMC Cell Biology

Year:

2004

Language:

english

File:

PDF, 1.13 MB

english, 2004

27

Quantitative Analysis of HGF and EGF-Dependent Phosphotyrosine Signaling Networks

Hammond, Dean E., Hyde, Russell, Kratchmarova, Irina, Beynon, Robert J., Blagoev, Blagoy, Clague, Michael J.

Journal:

Journal of Proteome Research

Year:

2010

Language:

english

File:

PDF, 2.32 MB

english, 2010

28

Modulation of Keratinocyte Gene Expression and Differentiation by PPAR-Selective Ligands and Tetradecylthioacetic Acid

Westergaard, Majken, Henningsen, Jeanette, Svendsen, Morten Lyne, Johansen, Claus, Jensen, Uffe Birk, Schrøder, Henrik Daa, Kratchmarova, Irina, Berge, Rolf Kristian, Iversen, Lars, Bolund, Lars, Krag

Journal:

The Journal of Investigative Dermatology

Year:

2001

Language:

english

File:

PDF, 516 KB

english, 2001

29

Specificity in Toll-like receptor signalling through distinct effector functions of TRAF3 and TRAF6

Häcker, Hans, Redecke, Vanessa, Blagoev, Blagoy, Kratchmarova, Irina, Hsu, Li-Chung, Wang, Gang G., Kamps, Mark P., Raz, Eyal, Wagner, Hermann, Häcker, Georg

Journal:

Year:

2005

Language:

english

File:

PDF, 355 KB

english, 2005

30

Role of adipocyte lipid-binding protein (ALBP) and acyl-CoA binding protein (ACBP) in PPAR-mediated transactivation

Torben Helledie, Forename Surname, Claus Jørgensen, Marianne Antonius, Anne-M. Krogsdam, Irina Kratchmarova, Karsten Kristiansen, Susanne Mandrup

Journal:

Molecular and Cellular Biochemistry

Year:

2002

Language:

english

File:

PDF, 194 KB

english, 2002

31

Characterization of promoter region and genomic structure of the murine and human genes encoding Src like adapter protein

Irina Kratchmarova, Tomasz Sosinowski, Arthur Weiss, Klaus Witter, Claudius Vincenz, Akhilesh Pandey

Journal:

Year:

2001

Language:

english

File:

PDF, 305 KB

english, 2001

32

Targeted mass spectrometry: An emerging powerful approach to unblock the bottleneck in phosphoproteomics

Osinalde, Nerea, Aloria, Kerman, Omaetxebarria, Miren J., Kratchmarova, Irina

Journal:

Journal of Chromatography B

Year:

2017

Language:

english

File:

PDF, 518 KB

english, 2017

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